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|
/*
This file is part of GNUnet.
Copyright (C) 2001, 2002, 2003, 2004, 2006, 2008, 2011, 2012 GNUnet e.V.
GNUnet is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published
by the Free Software Foundation; either version 3, or (at your
option) any later version.
GNUnet is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with GNUnet; see the file COPYING. If not, write to the
Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
Boston, MA 02110-1301, USA.
*/
/**
* @file util/container_bloomfilter.c
* @brief data structure used to reduce disk accesses.
*
* The idea basically: Create a signature for each element in the
* database. Add those signatures to a bit array. When doing a lookup,
* check if the bit array matches the signature of the requested
* element. If yes, address the disk, otherwise return 'not found'.
*
* A property of the bloom filter is that sometimes we will have
* a match even if the element is not on the disk (then we do
* an unnecessary disk access), but what's most important is that
* we never get a single "false negative".
*
* To be able to delete entries from the bloom filter, we maintain
* a 4 bit counter in the file on the drive (we still use only one
* bit in memory).
*
* @author Igor Wronsky
* @author Christian Grothoff
*/
#include "platform.h"
#include "gnunet_util_lib.h"
#define LOG(kind,...) GNUNET_log_from (kind, "util", __VA_ARGS__)
#define LOG_STRERROR(kind,syscall) GNUNET_log_from_strerror (kind, "util", syscall)
#define LOG_STRERROR_FILE(kind,syscall,filename) GNUNET_log_from_strerror_file (kind, "util", syscall, filename)
struct GNUNET_CONTAINER_BloomFilter
{
/**
* The actual bloomfilter bit array
*/
char *bitArray;
/**
* Filename of the filter
*/
char *filename;
/**
* The bit counter file on disk
*/
struct GNUNET_DISK_FileHandle *fh;
/**
* How many bits we set for each stored element
*/
unsigned int addressesPerElement;
/**
* Size of bitArray in bytes
*/
size_t bitArraySize;
};
/**
* Get the number of the addresses set per element in the bloom filter.
*
* @param bf the filter
* @return addresses set per element in the bf
*/
size_t
GNUNET_CONTAINER_bloomfilter_get_element_addresses (const struct GNUNET_CONTAINER_BloomFilter
*bf)
{
if (bf == NULL)
return 0;
return bf->addressesPerElement;
}
/**
* Get size of the bloom filter.
*
* @param bf the filter
* @return number of bytes used for the data of the bloom filter
*/
size_t
GNUNET_CONTAINER_bloomfilter_get_size (const struct GNUNET_CONTAINER_BloomFilter
*bf)
{
if (bf == NULL)
return 0;
return bf->bitArraySize;
}
/**
* Copy an existing memory. Any association with a file
* on-disk will be lost in the process.
* @param bf the filter to copy
* @return copy of the bf
*/
struct GNUNET_CONTAINER_BloomFilter *
GNUNET_CONTAINER_bloomfilter_copy (const struct GNUNET_CONTAINER_BloomFilter
*bf)
{
return GNUNET_CONTAINER_bloomfilter_init (bf->bitArray, bf->bitArraySize,
bf->addressesPerElement);
}
/**
* Sets a bit active in the bitArray. Increment bit-specific
* usage counter on disk only if below 4bit max (==15).
*
* @param bitArray memory area to set the bit in
* @param bitIdx which bit to set
*/
static void
setBit (char *bitArray, unsigned int bitIdx)
{
size_t arraySlot;
unsigned int targetBit;
arraySlot = bitIdx / 8;
targetBit = (1L << (bitIdx % 8));
bitArray[arraySlot] |= targetBit;
}
/**
* Clears a bit from bitArray. Bit is cleared from the array
* only if the respective usage counter on the disk hits/is zero.
*
* @param bitArray memory area to set the bit in
* @param bitIdx which bit to unset
*/
static void
clearBit (char *bitArray, unsigned int bitIdx)
{
size_t slot;
unsigned int targetBit;
slot = bitIdx / 8;
targetBit = (1L << (bitIdx % 8));
bitArray[slot] = bitArray[slot] & (~targetBit);
}
/**
* Checks if a bit is active in the bitArray
*
* @param bitArray memory area to set the bit in
* @param bitIdx which bit to test
* @return GNUNET_YES if the bit is set, GNUNET_NO if not.
*/
static int
testBit (char *bitArray, unsigned int bitIdx)
{
size_t slot;
unsigned int targetBit;
slot = bitIdx / 8;
targetBit = (1L << (bitIdx % 8));
if (bitArray[slot] & targetBit)
return GNUNET_YES;
else
return GNUNET_NO;
}
/**
* Sets a bit active in the bitArray and increments
* bit-specific usage counter on disk (but only if
* the counter was below 4 bit max (==15)).
*
* @param bitArray memory area to set the bit in
* @param bitIdx which bit to test
* @param fh A file to keep the 4 bit address usage counters in
*/
static void
incrementBit (char *bitArray, unsigned int bitIdx,
const struct GNUNET_DISK_FileHandle *fh)
{
off_t fileSlot;
unsigned char value;
unsigned int high;
unsigned int low;
unsigned int targetLoc;
setBit (bitArray, bitIdx);
if (GNUNET_DISK_handle_invalid (fh))
return;
/* Update the counter file on disk */
fileSlot = bitIdx / 2;
targetLoc = bitIdx % 2;
GNUNET_assert (fileSlot ==
GNUNET_DISK_file_seek (fh, fileSlot, GNUNET_DISK_SEEK_SET));
if (1 != GNUNET_DISK_file_read (fh, &value, 1))
value = 0;
low = value & 0xF;
high = (value & (~0xF)) >> 4;
if (targetLoc == 0)
{
if (low < 0xF)
low++;
}
else
{
if (high < 0xF)
high++;
}
value = ((high << 4) | low);
GNUNET_assert (fileSlot ==
GNUNET_DISK_file_seek (fh, fileSlot, GNUNET_DISK_SEEK_SET));
GNUNET_assert (1 == GNUNET_DISK_file_write (fh, &value, 1));
}
/**
* Clears a bit from bitArray if the respective usage
* counter on the disk hits/is zero.
*
* @param bitArray memory area to set the bit in
* @param bitIdx which bit to test
* @param fh A file to keep the 4bit address usage counters in
*/
static void
decrementBit (char *bitArray, unsigned int bitIdx,
const struct GNUNET_DISK_FileHandle *fh)
{
off_t fileslot;
unsigned char value;
unsigned int high;
unsigned int low;
unsigned int targetLoc;
if (GNUNET_DISK_handle_invalid (fh))
return; /* cannot decrement! */
/* Each char slot in the counter file holds two 4 bit counters */
fileslot = bitIdx / 2;
targetLoc = bitIdx % 2;
if (GNUNET_SYSERR == GNUNET_DISK_file_seek (fh, fileslot, GNUNET_DISK_SEEK_SET))
{
GNUNET_log_strerror (GNUNET_ERROR_TYPE_ERROR, "seek");
return;
}
if (1 != GNUNET_DISK_file_read (fh, &value, 1))
value = 0;
low = value & 0xF;
high = (value & 0xF0) >> 4;
/* decrement, but once we have reached the max, never go back! */
if (targetLoc == 0)
{
if ((low > 0) && (low < 0xF))
low--;
if (low == 0)
{
clearBit (bitArray, bitIdx);
}
}
else
{
if ((high > 0) && (high < 0xF))
high--;
if (high == 0)
{
clearBit (bitArray, bitIdx);
}
}
value = ((high << 4) | low);
if (GNUNET_SYSERR == GNUNET_DISK_file_seek (fh, fileslot, GNUNET_DISK_SEEK_SET))
{
GNUNET_log_strerror (GNUNET_ERROR_TYPE_ERROR, "seek");
return;
}
GNUNET_assert (1 == GNUNET_DISK_file_write (fh, &value, 1));
}
#define BUFFSIZE 65536
/**
* Creates a file filled with zeroes
*
* @param fh the file handle
* @param size the size of the file
* @return GNUNET_OK if created ok, GNUNET_SYSERR otherwise
*/
static int
make_empty_file (const struct GNUNET_DISK_FileHandle *fh, size_t size)
{
char buffer[BUFFSIZE];
size_t bytesleft = size;
int res = 0;
if (GNUNET_DISK_handle_invalid (fh))
return GNUNET_SYSERR;
memset (buffer, 0, sizeof (buffer));
GNUNET_DISK_file_seek (fh, 0, GNUNET_DISK_SEEK_SET);
while (bytesleft > 0)
{
if (bytesleft > sizeof (buffer))
{
res = GNUNET_DISK_file_write (fh, buffer, sizeof (buffer));
if (res >= 0)
bytesleft -= res;
}
else
{
res = GNUNET_DISK_file_write (fh, buffer, bytesleft);
if (res >= 0)
bytesleft -= res;
}
if (GNUNET_SYSERR == res)
return GNUNET_SYSERR;
}
return GNUNET_OK;
}
/* ************** GNUNET_CONTAINER_BloomFilter iterator ********* */
/**
* Iterator (callback) method to be called by the
* bloomfilter iterator on each bit that is to be
* set or tested for the key.
*
* @param cls closure
* @param bf the filter to manipulate
* @param bit the current bit
* @return GNUNET_YES to continue, GNUNET_NO to stop early
*/
typedef int (*BitIterator) (void *cls,
const struct GNUNET_CONTAINER_BloomFilter * bf,
unsigned int bit);
/**
* Call an iterator for each bit that the bloomfilter
* must test or set for this element.
*
* @param bf the filter
* @param callback the method to call
* @param arg extra argument to callback
* @param key the key for which we iterate over the BF bits
*/
static void
iterateBits (const struct GNUNET_CONTAINER_BloomFilter *bf,
BitIterator callback, void *arg, const struct GNUNET_HashCode *key)
{
struct GNUNET_HashCode tmp[2];
int bitCount;
unsigned int round;
unsigned int slot = 0;
bitCount = bf->addressesPerElement;
tmp[0] = *key;
round = 0;
GNUNET_assert (bf->bitArraySize > 0);
GNUNET_assert (bf->bitArraySize * 8LL > bf->bitArraySize);
while (bitCount > 0)
{
while (slot < (sizeof (struct GNUNET_HashCode) / sizeof (uint32_t)))
{
if (GNUNET_YES !=
callback (arg, bf,
ntohl ((((uint32_t *) & tmp[round & 1])[slot])) %
((bf->bitArraySize * 8LL))))
return;
slot++;
bitCount--;
if (bitCount == 0)
break;
}
if (bitCount > 0)
{
GNUNET_CRYPTO_hash (&tmp[round & 1], sizeof (struct GNUNET_HashCode),
&tmp[(round + 1) & 1]);
round++;
slot = 0;
}
}
}
/**
* Callback: increment bit
*
* @param cls pointer to writeable form of bf
* @param bf the filter to manipulate
* @param bit the bit to increment
* @return GNUNET_YES
*/
static int
incrementBitCallback (void *cls, const struct GNUNET_CONTAINER_BloomFilter *bf,
unsigned int bit)
{
struct GNUNET_CONTAINER_BloomFilter *b = cls;
incrementBit (b->bitArray, bit, bf->fh);
return GNUNET_YES;
}
/**
* Callback: decrement bit
*
* @param cls pointer to writeable form of bf
* @param bf the filter to manipulate
* @param bit the bit to decrement
* @return GNUNET_YES
*/
static int
decrementBitCallback (void *cls, const struct GNUNET_CONTAINER_BloomFilter *bf,
unsigned int bit)
{
struct GNUNET_CONTAINER_BloomFilter *b = cls;
decrementBit (b->bitArray, bit, bf->fh);
return GNUNET_YES;
}
/**
* Callback: test if all bits are set
*
* @param cls pointer set to GNUNET_NO if bit is not set
* @param bf the filter
* @param bit the bit to test
* @return YES if the bit is set, NO if not
*/
static int
testBitCallback (void *cls, const struct GNUNET_CONTAINER_BloomFilter *bf,
unsigned int bit)
{
int *arg = cls;
if (GNUNET_NO == testBit (bf->bitArray, bit))
{
*arg = GNUNET_NO;
return GNUNET_NO;
}
return GNUNET_YES;
}
/* *********************** INTERFACE **************** */
/**
* Load a bloom-filter from a file.
*
* @param filename the name of the file (or the prefix)
* @param size the size of the bloom-filter (number of
* bytes of storage space to use); will be rounded up
* to next power of 2
* @param k the number of GNUNET_CRYPTO_hash-functions to apply per
* element (number of bits set per element in the set)
* @return the bloomfilter
*/
struct GNUNET_CONTAINER_BloomFilter *
GNUNET_CONTAINER_bloomfilter_load (const char *filename, size_t size,
unsigned int k)
{
struct GNUNET_CONTAINER_BloomFilter *bf;
char *rbuff;
off_t pos;
int i;
size_t ui;
off_t fsize;
int must_read;
GNUNET_assert (NULL != filename);
if ((k == 0) || (size == 0))
return NULL;
if (size < BUFFSIZE)
size = BUFFSIZE;
ui = 1;
while ( (ui < size) &&
(ui * 2 > ui) )
ui *= 2;
size = ui; /* make sure it's a power of 2 */
bf = GNUNET_new (struct GNUNET_CONTAINER_BloomFilter);
/* Try to open a bloomfilter file */
if (GNUNET_YES == GNUNET_DISK_file_test (filename))
bf->fh =
GNUNET_DISK_file_open (filename,
GNUNET_DISK_OPEN_READWRITE,
GNUNET_DISK_PERM_USER_READ |
GNUNET_DISK_PERM_USER_WRITE);
if (NULL != bf->fh)
{
/* file existed, try to read it! */
must_read = GNUNET_YES;
if (GNUNET_OK !=
GNUNET_DISK_file_handle_size (bf->fh, &fsize))
{
GNUNET_DISK_file_close (bf->fh);
GNUNET_free (bf);
return NULL;
}
if (fsize == 0)
{
/* found existing empty file, just overwrite */
if (GNUNET_OK != make_empty_file (bf->fh, size * 4LL))
{
GNUNET_log_strerror (GNUNET_ERROR_TYPE_WARNING,
"write");
GNUNET_DISK_file_close (bf->fh);
GNUNET_free (bf);
return NULL;
}
}
else if (fsize != size * 4LL)
{
GNUNET_log (GNUNET_ERROR_TYPE_ERROR,
_("Size of file on disk is incorrect for this Bloom filter (want %llu, have %llu)\n"),
(unsigned long long) (size * 4LL),
(unsigned long long) fsize);
GNUNET_DISK_file_close (bf->fh);
GNUNET_free (bf);
return NULL;
}
}
else
{
/* file did not exist, don't read, just create */
must_read = GNUNET_NO;
bf->fh =
GNUNET_DISK_file_open (filename,
GNUNET_DISK_OPEN_CREATE |
GNUNET_DISK_OPEN_READWRITE,
GNUNET_DISK_PERM_USER_READ |
GNUNET_DISK_PERM_USER_WRITE);
if (NULL == bf->fh)
{
GNUNET_free (bf);
return NULL;
}
if (GNUNET_OK != make_empty_file (bf->fh, size * 4LL))
{
GNUNET_log_strerror (GNUNET_ERROR_TYPE_WARNING,
"write");
GNUNET_DISK_file_close (bf->fh);
GNUNET_free (bf);
return NULL;
}
}
bf->filename = GNUNET_strdup (filename);
/* Alloc block */
bf->bitArray = GNUNET_malloc_large (size);
if (bf->bitArray == NULL)
{
if (bf->fh != NULL)
GNUNET_DISK_file_close (bf->fh);
GNUNET_free (bf->filename);
GNUNET_free (bf);
return NULL;
}
bf->bitArraySize = size;
bf->addressesPerElement = k;
if (GNUNET_YES != must_read)
return bf; /* already done! */
/* Read from the file what bits we can */
rbuff = GNUNET_malloc (BUFFSIZE);
pos = 0;
while (pos < size * 8LL)
{
int res;
res = GNUNET_DISK_file_read (bf->fh, rbuff, BUFFSIZE);
if (res == -1)
{
LOG_STRERROR_FILE (GNUNET_ERROR_TYPE_WARNING, "read", bf->filename);
GNUNET_free (rbuff);
GNUNET_free (bf->filename);
GNUNET_DISK_file_close (bf->fh);
GNUNET_free (bf);
return NULL;
}
if (res == 0)
break; /* is ok! we just did not use that many bits yet */
for (i = 0; i < res; i++)
{
if ((rbuff[i] & 0x0F) != 0)
setBit (bf->bitArray, pos + i * 2);
if ((rbuff[i] & 0xF0) != 0)
setBit (bf->bitArray, pos + i * 2 + 1);
}
if (res < BUFFSIZE)
break;
pos += BUFFSIZE * 2; /* 2 bits per byte in the buffer */
}
GNUNET_free (rbuff);
return bf;
}
/**
* Create a bloom filter from raw bits.
*
* @param data the raw bits in memory (maybe NULL,
* in which case all bits should be considered
* to be zero).
* @param size the size of the bloom-filter (number of
* bytes of storage space to use); also size of data
* -- unless data is NULL
* @param k the number of GNUNET_CRYPTO_hash-functions to apply per
* element (number of bits set per element in the set)
* @return the bloomfilter
*/
struct GNUNET_CONTAINER_BloomFilter *
GNUNET_CONTAINER_bloomfilter_init (const char *data, size_t size,
unsigned int k)
{
struct GNUNET_CONTAINER_BloomFilter *bf;
if ((0 == k) || (0 == size))
return NULL;
bf = GNUNET_new (struct GNUNET_CONTAINER_BloomFilter);
bf->filename = NULL;
bf->fh = NULL;
bf->bitArray = GNUNET_malloc_large (size);
if (NULL == bf->bitArray)
{
GNUNET_free (bf);
return NULL;
}
bf->bitArraySize = size;
bf->addressesPerElement = k;
if (NULL != data)
GNUNET_memcpy (bf->bitArray, data, size);
return bf;
}
/**
* Copy the raw data of this bloomfilter into
* the given data array.
*
* @param bf bloomfilter to take the raw data from
* @param data where to write the data
* @param size the size of the given data array
* @return GNUNET_SYSERR if the data array is not big enough
*/
int
GNUNET_CONTAINER_bloomfilter_get_raw_data (const struct
GNUNET_CONTAINER_BloomFilter *bf,
char *data, size_t size)
{
if (NULL == bf)
return GNUNET_SYSERR;
if (bf->bitArraySize != size)
return GNUNET_SYSERR;
GNUNET_memcpy (data, bf->bitArray, size);
return GNUNET_OK;
}
/**
* Free the space associated with a filter
* in memory, flush to drive if needed (do not
* free the space on the drive)
*
* @param bf the filter
*/
void
GNUNET_CONTAINER_bloomfilter_free (struct GNUNET_CONTAINER_BloomFilter *bf)
{
if (NULL == bf)
return;
if (bf->fh != NULL)
GNUNET_DISK_file_close (bf->fh);
GNUNET_free_non_null (bf->filename);
GNUNET_free (bf->bitArray);
GNUNET_free (bf);
}
/**
* Reset a bloom filter to empty. Clears the file on disk.
*
* @param bf the filter
*/
void
GNUNET_CONTAINER_bloomfilter_clear (struct GNUNET_CONTAINER_BloomFilter *bf)
{
if (NULL == bf)
return;
memset (bf->bitArray, 0, bf->bitArraySize);
if (bf->filename != NULL)
make_empty_file (bf->fh, bf->bitArraySize * 4LL);
}
/**
* Test if an element is in the filter.
*
* @param e the element
* @param bf the filter
* @return GNUNET_YES if the element is in the filter, GNUNET_NO if not
*/
int
GNUNET_CONTAINER_bloomfilter_test (const struct GNUNET_CONTAINER_BloomFilter
*bf, const struct GNUNET_HashCode * e)
{
int res;
if (NULL == bf)
return GNUNET_YES;
res = GNUNET_YES;
iterateBits (bf, &testBitCallback, &res, e);
return res;
}
/**
* Add an element to the filter
*
* @param bf the filter
* @param e the element
*/
void
GNUNET_CONTAINER_bloomfilter_add (struct GNUNET_CONTAINER_BloomFilter *bf,
const struct GNUNET_HashCode * e)
{
if (NULL == bf)
return;
iterateBits (bf, &incrementBitCallback, bf, e);
}
/**
* Or the entries of the given raw data array with the
* data of the given bloom filter. Assumes that
* the size of the data array and the current filter
* match.
*
* @param bf the filter
* @param data the data to or-in
* @param size number of bytes in data
*/
int
GNUNET_CONTAINER_bloomfilter_or (struct GNUNET_CONTAINER_BloomFilter *bf,
const char *data, size_t size)
{
unsigned int i;
unsigned int n;
unsigned long long *fc;
const unsigned long long *dc;
if (NULL == bf)
return GNUNET_YES;
if (bf->bitArraySize != size)
return GNUNET_SYSERR;
fc = (unsigned long long *) bf->bitArray;
dc = (const unsigned long long *) data;
n = size / sizeof (unsigned long long);
for (i = 0; i < n; i++)
fc[i] |= dc[i];
for (i = n * sizeof (unsigned long long); i < size; i++)
bf->bitArray[i] |= data[i];
return GNUNET_OK;
}
/**
* Or the entries of the given raw data array with the
* data of the given bloom filter. Assumes that
* the size of the data array and the current filter
* match.
*
* @param bf the filter
* @param to_or the bloomfilter to or-in
* @return #GNUNET_OK on success
*/
int
GNUNET_CONTAINER_bloomfilter_or2 (struct GNUNET_CONTAINER_BloomFilter *bf,
const struct GNUNET_CONTAINER_BloomFilter
*to_or)
{
unsigned int i;
unsigned int n;
unsigned long long *fc;
const unsigned long long *dc;
size_t size;
if (NULL == bf)
return GNUNET_OK;
if (bf->bitArraySize != to_or->bitArraySize)
{
GNUNET_break (0);
return GNUNET_SYSERR;
}
size = bf->bitArraySize;
fc = (unsigned long long *) bf->bitArray;
dc = (const unsigned long long *) to_or->bitArray;
n = size / sizeof (unsigned long long);
for (i = 0; i < n; i++)
fc[i] |= dc[i];
for (i = n * sizeof (unsigned long long); i < size; i++)
bf->bitArray[i] |= to_or->bitArray[i];
return GNUNET_OK;
}
/**
* Remove an element from the filter.
*
* @param bf the filter
* @param e the element to remove
*/
void
GNUNET_CONTAINER_bloomfilter_remove (struct GNUNET_CONTAINER_BloomFilter *bf,
const struct GNUNET_HashCode * e)
{
if (NULL == bf)
return;
if (bf->filename == NULL)
return;
iterateBits (bf, &decrementBitCallback, bf, e);
}
/**
* Resize a bloom filter. Note that this operation
* is pretty costly. Essentially, the bloom filter
* needs to be completely re-build.
*
* @param bf the filter
* @param iterator an iterator over all elements stored in the BF
* @param iterator_cls argument to the iterator function
* @param size the new size for the filter
* @param k the new number of GNUNET_CRYPTO_hash-function to apply per element
*/
void
GNUNET_CONTAINER_bloomfilter_resize (struct GNUNET_CONTAINER_BloomFilter *bf,
GNUNET_CONTAINER_HashCodeIterator iterator,
void *iterator_cls, size_t size,
unsigned int k)
{
struct GNUNET_HashCode hc;
unsigned int i;
GNUNET_free (bf->bitArray);
i = 1;
while (i < size)
i *= 2;
size = i; /* make sure it's a power of 2 */
bf->bitArraySize = size;
bf->bitArray = GNUNET_malloc (size);
if (bf->filename != NULL)
make_empty_file (bf->fh, bf->bitArraySize * 4LL);
while (GNUNET_YES == iterator (iterator_cls, &hc))
GNUNET_CONTAINER_bloomfilter_add (bf, &hc);
}
/* end of container_bloomfilter.c */
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